Knowledge graph centered on Maximum likelihood phylogenetic analysis with 60 nodes and 178 connections. Top connected: Bombus, Bombus terrestris, Bombus appositus, B. appositus, Bombus impatiens.
Maximum likelihood phylogenetic analysis of full genome sequences using MUSCLE alignment and Tamura-Nei evolutionary model to determine relationships between outbreak isolates and assess overwintering versus new incursion.
Synthesized from method descriptions across 3 papers using this protocol.
Steps below were extracted from the most recent peer-reviewed implementation of this protocol in the corpus — Metagenome-assembled genomes for oligotrophic nitrifiers From a mountainous gravelbed floodplain (2025), Environmental Microbiology. Implementations in other papers (listed below) may differ.