Checking billy barr’s snow log…
Knowledge graph centered on maximum likelihood phylogeny with 48 nodes and 142 connections. Top connected: Lepidoptera, Bacteria, Arabidopsis, Colias, chickens.
Construction of phylogenetic trees using concatenated ribosomal protein genes to determine evolutionary relationships. Uses IQ-TREE with maximum likelihood approach and bootstrap support.
Synthesized from method descriptions across 2 papers using this protocol.
Steps below were extracted from the most recent peer-reviewed implementation of this protocol in the corpus — Metagenome-assembled genomes for oligotrophic nitrifiers From a mountainous gravelbed floodplain (2025), Environmental Microbiology. Implementations in other papers (listed below) may differ.