Knowledge graph centered on rpS3 marker gene analysis with 68 nodes and 133 connections. Top connected: leaf water content, Crested Butte, carbon cycling, biogeochemical reactions, nitrogen retention.
Taxonomic classification of microbial communities using ribosomal protein S3 (rpS3) marker genes identified through Hidden Markov Models and phylogenetic analysis.
Synthesized from method descriptions across 1 paper using this protocol.
Steps below were extracted from the most recent peer-reviewed implementation of this protocol in the corpus — Microbial communities across a hillslope-riparian transect shaped by proximity to the stream, groundwater table, and weathered bedrock (2019), Ecology and Evolution. Implementations in other papers (listed below) may differ.