Waiting for the snow to melt…
Knowledge graph centered on Viral sequence detection and vOTU clustering with 37 nodes and 129 connections. Top connected: Potentilla, Bacteria, A. tridentata, Lupinus, Veratrum.
Computational pipeline using VirSorter2 and CheckV for viral sequence identification, followed by clustering into viral operational taxonomic units and taxonomic/host prediction.
Synthesized from method descriptions across 1 paper using this protocol.
Steps below were extracted from the most recent peer-reviewed implementation of this protocol in the corpus — Virus diversity and activity is driven by snowmelt and host dynamics in a high-altitude watershed soil ecosystem (2023), Microbiome. Implementations in other papers (listed below) may differ.