Knowledge graph centered on Viral sequence detection and vOTU clustering with 35 nodes and 122 connections. Top connected: Rocky Mountain Biological Laboratory, Crested Butte, Potentilla gracilis, Potentilla pulcherrima, Potentilla.
Computational pipeline using VirSorter2 and CheckV for viral sequence identification, followed by clustering into viral operational taxonomic units and taxonomic/host prediction.
Synthesized from method descriptions across 1 paper using this protocol.
Steps below were extracted from the most recent peer-reviewed implementation of this protocol in the corpus — Virus diversity and activity is driven by snowmelt and host dynamics in a high-altitude watershed soil ecosystem (2023), Microbiome. Implementations in other papers (listed below) may differ.